thescientist | Since the 1970s, when researchers turned
up similarities between DNA in eukaryotes’ mitochondria and bacterial
genomes, scientists have suspected that the organelles descended from
symbionts that took up residence within larger cells. A diverse class of
bacteria called Alphaproteobacteria soon emerged as a likely candidate
for the evolutionary origins of mitochondria.
But a new analysis,
published today (April 25) in Nature,
suggests that mitochondria are at best distant cousins to known
alphaproteobacteria lineages, and not descendents as previously thought.
“We are still left hungry for the ancestor of mitochondria,” says Puri Lopez-Garcia, a biologist at the University of Paris-South who was not involved in the study.
While it’s generally agreed that Alphaproteobacteria includes the
closest bacterial relatives of mitochondria, that relationship doesn’t
reveal much about how mitochondrial ancestors made a living or how they
made the jump to acting as organelles. That’s because
“Alphaproteobacteria is a particularly diverse group of organisms in
terms of kinds of metabolism,” Lopez-Garcia explains.
“You find more or
less everything in there.” Some studies have found genetic similarities
between mitochondria and an order of alphaproteobacterial symbionts
known as Rickettsiales, but other, free-living candidates have also
emerged.
The question of where on the alphaproteobacteria family tree the mitochondrial ancestor fell has pestered study coauthor Thijs Ettema
throughout his scientific career. “Now, with all the available data
from all these new lineages in all sorts of environments, we thought we
should just do one bold approach and see where this ends up,” says
Ettema, an evolutionary biologist at Uppsala University in Sweden.
Much of the genomic data he and colleagues used in their analysis came from the Tara Oceans
dataset, which includes metagenomic sequences from microbes in ocean
waters sampled from various depths. “For reasons that are not extremely
clear . . . it seems that oceanic waters are extremely enriched for
Alphaproteobacteria, and not just one species—it seems to be a whole
array,” Ettema explains. The datasets were “good and deep enough to make
an effort to reconstruct near-complete genomes.”
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